BioStar is a site for asking, answering and discussing bioinformatics questions. We are members of thecommunity and find it very useful. Often questions and answers arise at BioStar that are germane to our readers (end users of genomics resources). Every Thursday we will be highlighting one of those questions and answers here in this thread. You can ask questions in this thread, or you can always join in at BioStar.
This week’s highlighted question:
I’m looking to do a project on predicting which bacteria colonize a particular host and determine the genomic features which determine these interactions.
Does anyone know of a good database which annotates any known interactions? I know I could pull the cross-organism interactions from a PPI database like BIND but that only gives a handful of examples and seems to be over restrictive.
I thought that was an interesting problem to tackle. Especially as we are going to be seeing more and more intriguing details come out of microbiome projects. I knew that the MINT database has a virus component that explored those sorts of interactions, but this question was a different twist on that.
There is a selected answer that relies on mining GenBank, but there are other interesting possibilities explored in the suggestions from other BioStar users as well. Check out the answers.